Botanical Studies (2007) 48: 117-126.
*
Corresponding author: Email: wlwang@cc.ncue.edu.tw;
Tel: 886-4-7232105, ext. 3436.
INTRODUCTION
There are six genera in the Family Characeae. Both
Chara Linnaeus and Nitella Agardh are widespread and
abundant species; both Lamprothamnium J. Groves and
Tolypella (A. Braun) A. Braun have a few species; and
both Nitellopsis Hy and Lychnothamnus (Ruprecht)
Leohardi are represented each by only one extant species.
The single extant species of Lychnothamnus, L. barbatus
(Meyen) Leonhardi, is actually a rare charophyte species
considered in decline (Casanova et al., 2003). The species
is the first charophyte declared endangered in Australia
(Garcia, 2003).
In Taiwan, freshwater algal studies have mainly
focused on microalgae (Yamagishi, 1992; Moriwaka and
Chyi, 1996; Wang and Chen, 2000; Wang et al., 2002)
and very little on macroalgae (Wu, 1999, 2001; Liu and
Wang, 2004). Reports on Characeae from Taiwan seldom
appear, except for some by Imahori (1951, 1953, 1954a,
1957) and Yang and Chiang (1978). In total, 21 species,
4 subspecies, and 10 varieties from two charalean genera
have been recorded in Taiwan (Imahori, 1951, 1953,
1954a, 1954b, 1957). Recently, observations of oospore
wall ornamentation using scanning electron microscopy
(SEM) have been used to identify the species of the
Order Charales (John and Moore, 1987; John et al., 1990;
Leitch et al., 1990; Casanova, 1991, 1997). Furthermore,
molecular phylogenetic analysis based either on the
large subunit of Rubisco (rbcL) or 18S ribosomal DNA
sequences has been carried out to resolve phylogenetic
relationships at the species or genera levels (McCourt
et al., 1996, 1999; Meiers et al., 1999). In addition,
the chloroplast-encoded atpB gene is a photosynthetic
gene that has also been used in the phylogeny of certain
algae and land plants (Lockhart et al., 1992; Wolf, 1997;
Sakayama et al., 2004a). However, Wolf (1997) and
Nozaki et al. (1999) pointed out similarities between the
divergences of the atpB gene and the rbcL gene among the
fern genera and the colonial Volvocales.
In this study, we collected three charalean algae from
southeast, northeast, and northern Taiwan, respectively.
We use SEM characters of oospores and the rbcL, atpB
gene and combine data from sequences to define the
species taxonomic relationships of our materials. Their
morphological characters are also described in detail.
MATERIALS AND METHODS
Morphological observations
Specimens were collected from southeast, northeast,
and northern Taiwan. Some specimen parts were preserved
in 95% alcohol for molecular analysis while other parts
were preserved in 4-5% formalin solution or dried as
herbarium specimens for morphological observations.
The liquid or cultural specimens were favored for detailed
examination. In LM observations, the vegetative and
reproductive structures were examined under a light
microscope at 100x and 200x magnification (Zeiss
Axioskop 2) and under a dissecting microscope (Zeiss
Stemi SV11). In SEM observations, matured oospores of
these species were cleaned before examination, and then
the tube cells were removed from the mature oospores by
a fine needle and forceps under a dissecting microscope.
Three new members of Characeae (Charales,
Chlorophyta) from Taiwan, including one endangered
monospecific genus
Jui-Yu CHOU
1
, Wei-Lung WANG
1,
*, and Jui-Sheng CHANG
2
1
Department of Biology, National Changhua University of Education, Changhua 500, Taiwan
2
Center of General Education, Yu-Da University, Miaoli 361, Taiwan
(Received September 12, 2005; Accepted May 17, 2006)
ABSTRACT
. From morphological and molecular analysis, three charalean species, Lychnothamnus barbatus
(Meyen) Leonhardi, Nitella japonica Allen, and N. inversa Imahori are recorded for the first time to the
freshwater algal flora of Taiwan. The endangered monospecific genus, Lychnothamnus (Ruprecht) Leohardi, is
the first genus recorded to the freshwater algal flora of Taiwan. In this study, we describe their morphological
characters in detail and use rbcL and atpB sequences to confirm their phylogenetic relationships.
Keywords: atpB gene; Characeae; Lychnothamnus; Nitella; rbcL gene; Taiwan.
TAxONOMy
pg_0002
118
Botanical Studies, Vol. 48, 2007
Selected oospores were placed for 12 h in a 10% solution
of Tween-20 detergent in water at 60¢XC (Casanova, 1991).
Then, they were sonicated for ca. 2 min (Casanova, 1997),
washed several times with distilled water, dehydrated
by Freeze Dryer (Eyela FDU-506), coated with Gold-
Paladium by a Sputter coater (Hitachi E-1010), and finally
observed with an SEM (Hitachi 2460N) at an accelerated
voltage of 20 KV. The terminology used to describe the
ornamentation patterns of charalean oospores followed
that of Wood (1965) and John and Moore (1987). Voucher
specimens have been deposited at Department of Biology,
National Changhua University of Education, Taiwan.
Phylogenetic analysis
Preparation of total DNA, amplification of DNA by the
polymerase chain reaction (PCR), and direct sequencing
of the PCR products followed the methods described by
Sakayama et al. (2002, 2004a). For phylogenetic analysis,
rbcL (1169 bp), atpB (1020 bp), and the combined
sequence data set (2189 bp) from 33 charalean operational
taxonomic units (OTUs) and three related species as
outgroup (Table 1) were each subjected to unweighted
maximum parsimony (MP) analysis using PAUP
*
4.0b10
(Swofford, 2002). The MP trees were constructed using
a heuristic search with the stepwise addition of 100
random replications and a tree bisection-reconnection
(TBR) branch swapping algorithm. Support for nodes of
the MP tree was assessed by calculating 1000 bootstrap
resamplings of the heuristic searches based on random
stepwise additions, MULTREES and TBR (Felsenstein,
1985). Based on the same alignment data, a maximum
likelihood (ML) analysis with the Hasegawa-Kishino-
Yano 85 model (Hasegawa et al., 1985) was carried out
using PAUP
*
4.0b10 to estimate "quartet puzzling support
(QPS) values," which has the same practical meaning as
bootstrap values, for internal branches of the phylogenetic
tree with 1000 "puzzling steps" (comparable to the number
of bootstrap replicates) (Strimmer and von Haeseler,
1996). We compared the pairwise distance based on the
Kimura 2-parameter method (Kimura, 1980) between the
populations of L. barbatus, N. mirabilis, and N. inversa in
Taiwan and those of other countries.
In order to test the congruence between the data sets
of the rbcL gene sequences (1169 bp) and the atpB
gene sequences (1020 bp), a partition-homogeneity test
(Farris et al., 1994) was carried out for the two data sets
based on 2000 replications of the heuristic search (with
TBR branch-swapping algorithm) using PAUP
*
4.0b10.
The P-value (0.4915) obtained here was not significant,
suggesting no conflicting phylogenetic signals between the
two data sets.
RESULTS
Morphological observations
Lychnothamnus barbatus (Meyen) Leonhardi, Lotos 13:
57, 1863. Figure 1
Synonym. Chara barbata Meyen, 1827; Charopsis
barbata (Meyen) Kutzing, 1843; Nitella barbata (Meyen)
Rabenhorst, 1847.
Specimen examined. The specimens were collected
by Liu, S. L. and Wang, W. L. from Lanyu Island (E121¢X
33¡¦ 2.10¡¦¡¦, N22¢X02¡¦ 19.38¡¦¡¦), Taitung, Taiwan, on 11 July
2003, No: NCUE-JYC-920711-1, 920711-2, 920711-3.
Diagnosis. Plants are up to 30 cm in height and light
green in color (Figure 1A). The stem axes are 550 £gm in
diameter. The internodes at the lower part of the plant are
longer than the upper ones, which are longer than branch-
lets. Spine cells are absent on the stem axes. Stipulodes are
in a single whorl and outnumber the branchlets twofold
(Figure 1B). There are 6-7 branchlets in a whorl, and each
branchlet is up to 1-3 cm high and with 2-3 articulations.
In culture, several shoots rise from one starchy bulbil at
the base of the axis. Plants are monoecious. Gametangia
arise from all the nodes of the branchlets, except at the
basal part of the whorls. At each node, one oogonium lo-
cated between two antheridia are produced (Figure 1C).
Antheridia are 200-230 £gm in diameter. The largest polar
axis (LPA) of mature oogonia are 950-1075 £gm, and the
largest equatorial diameter (LED) is 600-725 £gm. Spiral
cells show 8-10 convolutions and consist of 5 coronula
cells (Figure 1D). Oospores are brown in color, 710-850
£gm long and 500-580 £g m in width with 8-9 striae (Figure
1E). SEM observation of the mature oospore wall showed
verrucate ornamentation (Figure 1F).
Nitella japonica Allen, Bull. Torrey Bot. Club 20:
119-120, 1893. Figure 2
Synonym. Nitella furcata (Roxburgh ex Bruzelius) C.
Agardh subsp. furcata var. sieberi (A. Braun) R. D. Wood
f. japonica (Allen) R. D. Wood, 1965.
Specimen examined. The specimens were collected
by Chou, J. Y. and Wu, S. Y. from Hsinchu (E121¢X08¡¦
024¡¦¡¦, N24¢X50¡¦565¡¦¡¦), Taiwan on 21 September 2005, No:
NCUE-JYC-940921-1, 940921-2, 940921-3.
Diagnosis. Plants are greenish in color and up to
15-25 cm in height (Figure 2A). The branchlets are once-
forked with 2-3 2-celled dactyls (Figure 2B), gametangia
conjoined at all the branchlet node. Thalli are monoecious.
The antheridia are 250-280 £gm in diameter (Figure 2C),
and the oogonia are 500-600 £gm in length (incl. coronula),
400-430 £gm in width (Figure 2D). The oospores, 310-340
£gm in length, 260-300 £gm in width, are oval in face view
and have 6-7 flanged ridges (Figure 2E). Under SEM
observation, the oospore wall ornamentation makes a
papillate pattern (Figures 2F-G). The papillae extend onto
the spiral ridges and also are produced on the flanges.
Nitella inversa Imahori, Kanazawa University Press,
Japan 234 pp, 1954b. Figure 3
Synonym. Nitella furcata (Roxburgh ex Bruzelius) C.
Agardh subsp. furcata var. Sieberi (A. Braun) R. D. Wood
f. inversa (Imahori) R. D. Wood, 1965.
pg_0003
CHOU et al. ¡X Three new members of Characeae from Taiwan
119
Table 1. List of the charalean species or strains and related species and GenBank accession numbers used for the present
phylogenetic analysis.
Species
Strain designation and
collection information
Accession number
rbcL gene atpB gene
Chara connivens Salzmann ex A. Braun
F140, Spain
AF097161
1
AF408782
9
Lamprothamnium macropogon (A. Braun) Ophel
X695, Australia
U27534
2
AF408783
9
Nitellopsis obtusa (Desvaux in Loiseleur-Deslongchamps) J. Groves F131B, Germany
U27530
2
AF408785
9
Lychnothamnus barbatus (Meyen) Leonhardi
Croa
U27533
1
-
Aus
AF097171
1
AF408784
9
Ger
AF097172
1
-
Lanyu Island, Taiwan AY707914
3
DQ076313
3
N. gracilens Morioka
S017, Japan
AB076061
4
AB110847
5
S018, Japan
AB076062
4
AB110848
5
KINU, Japan
AB076063
4
AB110849
5
S049, Japan
AB110870
5
AB110850
5
S050, Japan
AB110871
5
AB110851
5
N. furcata (Roxburgh ex Bruzelius) C. Agardh
S003, Japan
AB076058
4
AB110842
5
S037, Japan
AB076059
4
AB110843
5
S074, Japan
AB169966
6
AB169958
6
N. inversa Imahori
S035, Japan
AB076060
4
AB110844
5
Hsinchu, Taiwan
AY804256
3
DQ119289
3
N. tumulosa Zaneveld
S058, Thailand
AB110868
5
AB110845
5
S060, Malaysia
AB110869
5
AB110846
5
N. japonica Allen
S077, Japan
AB169959
6
AB169967
6
S083, Japan
AB169960
6
AB169968
6
S077, Japan
AB169961
6
AB169969
6
Hsinchu, Taiwan
N. pseudoflabellata A. Braun
S031, Japan
AB076064
4
AB110852
5
S032, Japan
AB076065
4
AB110853
5
S016, Japan
AB076066
4
AB110854
5
N. hyalina (De Candolle) C. Agardh
S012, Japan
AB076067
4
AB110856
5
S061, unknown
AB110873
5
AB110857
5
N. spiciformis Morioka
S015, Japan
AB076068
4
AB110859
5
S055, Japan
AB110875
5
AB110860
5
N. moriokae R.D. Wood
S004, Japan
AB076069
4
AB110861
5
S052, Japan
AB110876
5
AB110862
5
Tolypella prolifera (Ziz ex A. Braun) Leonhardi
F150, France
AF097175
1
AF408787
9
Coleochaete orbicularis Pringsheim
UTEX LB 2651
L13477
7
AF408788
9
Zygnema peliosporum Wittrock
UTEX LB 45
U38701
8
AF408799
9
Klebsormidium flaccidum (Kutzing) P.C. Sliva et al.
UTEX LB 2017
L13478
7
AF408801
9
1
McCourt et al., 1999;
2
McCourt et al., 1996;
3
This study;
4
Sakayama et al., 2002;
5
Sakayama et al., 2004a;
6
Sakayama et
al., 2004b;
7
Manhart, 1994;
8
McCourt et al., 1995;
9
Karol et al., 2001;
10
Cimino and Delwiche, 2002.
pg_0004
120
Botanical Studies, Vol. 48, 2007
Specimen examined. The specimens were collected by
Chou, J. Y. and Wu, S. Y. from Hsinchu (E121¢X08¡¦024¡¦¡¦,
N24¢X50¡¦565¡¦¡¦), Taiwan on 14 May 2004, No: NCUE-
JYC-930514-1, 930514-2, 930514-3.
Diagnosis. Plants are greenish in color and up to 8-20
cm in height (Figure 3A). Dactyls are predominantly
abbreviated and 2 (-3) celled (Figure 3B). Gametangia
are conjoined at each branchlet node, except the ultimate
node. The antheridia are 190-260 £gm in diameter
(Figure 3C), and the oogonia are 440-500 £gm in length
(incl. coronula), 300-400 £gm in width (Figure 3D). The
oospores, 302-310 £gm in length, 279-311 £gm in width, are
orbicular in face view and have 6-7 weakly flanged ridges
(Figure 3E). Under SEM observation, the oospore wall
ornamentation makes a papillate pattern (Figures 3F-G).
Molecular analyses
The topologies resolved in the rbcL-atpB combined
gene analysis were essentially the same as those in
the rbcL gene analysis (Figure 4, the tree is 767 steps
long, with CI=0.6845 and RI= 0.8328), except for some
detailed phylogenetic relationships that did not affect
our conclusion. Only one of six equally maximum
parsimonious trees (based on rbcL sequence data set¡¦s
1169 aligned characters with 271 potentially parsimony-
informative characters), was found in MP analyses, based
Figure 1. Lychnothamnus barbatus (Meyen) Leonhardi. A, Habit; B, Part of branchlets showed the single whorl stipulodes (arrow);
C, One oogonium (arrowhead) between two antheridia (arrow) arose from the node of branchlet; D, Mature oogonium arose from the
node; E, Oospore with 8-10 flanged spiral ridges under SEM observation; F, Oospore wall showed verrucate ornamentation.
pg_0005
CHOU et al. ¡X Three new members of Characeae from Taiwan
121
on a heuristic search using the stepwise addition of 100
random replications, and it is shown in Figure 4, in which
we show the branches supported by . 50% bootstrap
values in MP analysis and the QPS value. In our molecular
analysis, we compared the pairwise distance based on the
Kimura 2-parameter method between the populations of
L. barbatus, N. japonica and N. inversa in Taiwan and
those of other countries. All of them were below 1% in
the rbcL gene, atpB gene, and combined sequence (Table
2). In the L. barbatus pair, the pairwise distance of the
rbcL gene, atpB gene, and combined sequence between
the populations in Taiwan and Australia was 0-0.086%,
0.197%, and 0.046%, respectively. In the N. japonica pair,
no difference between the pairwise distances of the rbcL
gene, atpB gene, or the populations in Taiwan and Japan
emerged. In the N. inersa pair, the pairwise distance of the
rbcL gene, atpB gene, and combined sequence between
the populations in Taiwan and Japan was 0.086%, 0.197%,
and 0.138%, respectively.
DISCUSSION
The Characeae comprise about 80 species in the
world (Wood, 1965). A total of three genera have been
recorded in Taiwan (Imahori, 1951, 1953, 1954a, 1957;
Yang and Chiang, 1978; this study). The occurrences of
some species, such as L. barbatus, are really very rare.
After an extensive survey from Taiwan and its offshore
island, three new members of Characeae, including one
new recorded genus, Lychnothamnus, can be added to
the algal flora of Taiwan. Imahori (1954a, 1957) pointed
out that the affinities between the floras of Taiwan and
the Philippines are 61.2%. Although these countries are
not continuous geographically, from the standpoint of
phytogeography, both belonging to the Paleotropical
Floral Zone. Imahori identified those species, however,
based only on morphological characters. Taxonomic re-
examination of Characeae in Taiwan is carried out based
on SEM characters and molecular analysis. In this study,
Figure 2. Nitella japonica Allen. A, Habit; B, The 2-celled dactyl; C, The antheridium; D, The oogonium; E, Oospore with six to
seven flanged spiral ridges under SEM observation; F, Under SEM observation, the oospore wall ornamentation makes a papillate
pattern that extends onto the spiral ridges and is also produced on the flanges; G, Detail of fossa wall showed it has more than 22
papillae across the fossa.
pg_0006
122
Botanical Studies, Vol. 48, 2007
Figure 3. Nitella inversa Imahori. A, Habit; B, The dactyl is three-celled; C, Branchlet node with conjoined antheridium (arrowhead)
and immature oogonium (arrow); D, Immature oogonia and mature oogonia (arrow); E, Oospore with six to seven flanged spiral ridges
on the surface under SEM observation; F, Part of fossa wall showed papillate pattern, with flanged spiral ridges on the surface under
SEM observation; G, Detail of fossa wall showed papillate pattern under SEM observation.
pg_0007
CHOU et al. ¡X Three new members of Characeae from Taiwan
123
Figure 4. One of the six equally maximum parsimonious (MP) trees based on 1169 bp in the coding regions of the rbcL gene sequence
data using 33 OTUs of the Characeae as ingroup and three related species, Coleochaete orbicularis, Zygnema peliosporum, and
Klebsormidium flaccidum as outgroup (tree length = 767 steps, CI = 0.6845, RI = 0.8328). The numbers on the branches are bootstrap
values (.50%) in MP analysis (above the branch) or QPS value (below the branch).
we found molecular analysis to also be a fast and accurate
way to identify taxonomic relationships.
Among the charalean algae, the genus Lychnothamnus
was erected based on the species Chara barbata Meyen
(1827) (Leonhardi, 1863; cf. Wood, 1965). Fossil records
make clear this genus occurred widely from the Late
Eocene to the Holocene. It was particularly divergent
and widespread in the Pliocene, but has declined since
then (Casanova et al., 2003). For the last few decades,
Lychnothamnus barbatus could not be found in Europe
or Asia, except for a population in Wallace Creek,
Queensland, Australia (McCourt et al., 1999) and one in
Lithuania (Balevicius, personal communication). It has
been enrolled in the protected list by the government
of Australia since 1997 (Garcia, 2003). Currently, L .
barbatus is considered a "Rare and Endangered Species"
in Australia (Casanova et al., 2003). Today, only five
different populations (in Croatia, Australia, Germany,
Lithuania, and Taiwan) are extant, and very few samples
are used for molecular study (McCourt et al., 1999; this
study). In this study, we found that the rbcL sequences of
L. barbatus from Taiwan are nearly identical to those of
specimens from Croatia, Australia, and Germany (data not
shown). When we compare the rbcL gene, atpB gene, and
combined sequence between the populations in Taiwan
and Australia, their sequences are closely related. The
pg_0008
124
Botanical Studies, Vol. 48, 2007
origin of the population in Taiwan can not be resolved
using present molecular data. We also compared the mean
oospore isopolarity index (ISI = LPA ¡Ñ 100/LED) of those
extant and fossil populations by measuring the largest
polar axis (LPA), the largest equatorial diameter (LED)
of oospores. We found the ISI index of the population
of Taiwan (ISI = 135-166) was close to the population
of Australia (ISI = 140-171), but quite different from
the population of Europe (ISI = 115-140). We suggest
the distribution of L. barbatus in Taiwan was dispersed
from Australia. Furthermore, we will try to use some
appropriate gene marker, such as the ITS regions of
nuclear ribosomal DNA, to support our hypothesis.
In this study, the materials of N. japonica agree with
the descriptions of Wood (1965) in having 2-4 forked
branchlets with 2-celled dactyl, gametangia conjoined
at all the branchlet nodes. Based on the similarity in
vegetative characters, Wood (1965) reduced N. japonica
to a form of N. furcata. However, the two species can
be clearly distinguished by differences in their oospore
wall ornamentation under SEM (Sakayama et al., 2002,
2005). The ornamentation of the former species is in
a papillate pattern (Sakayama et al., 2005; this study,
Figure 2E-G) while the later species exhibits an imperfect
reticulate ornamentation (Caceres, 1975; Mandal et al.,
1995; Sakayama et al., 2002). Though the oospore wall
ornamentation of N. japonica is similar to N. inversa,
it can be distinguished based on the number of papillae
across the fossa. The former species has more than 22
papillae across its fossa (Sakayama et al., 2005; this study,
Figure 2F) while the later species has up to 20 (Sakayama
et al., 2002; this study, Figure 3F). Additionally, we can
use phylogenetic analyses to separate these two species
(Figure 4).
The oospore wall ornamentation of N. furcata exhibits
an imperfect reticulate ornamentation (Mandal et al.,
1995; Sakayama et al., 2002), and N. inversa exhibits
papillate ornamentation (Sakayama et al., 2002).
According to Wood (1965), N. furcata f . megacarpa
(Allen) R. D. Wood (= N. megacarpa Allen) has the same
papillate ornamentation on the fossa wall as N. inversa.
However, the positioning of the antheridia in N. inversa
is unique in the infraspecific taxa of N. furcata. They are
predominantly lateral on the brachlet nodes and borne
terminally in the other taxa (Wood, 1965). Therefore,
N. inversa can be clearly distinguished from N. furcata
and its related taxa. John and Moore (1987), however,
suggested that the morphology of oospores should be used
to delineate the species of Nitella, due to its stability under
SEM observations. Both N. inversa and N. furcata exhibit
nearly identical rbcL gene sequences (Sakayama et al.,
2002). The fossa wall of N. furcata shows an imperfect
or irregular reticulate pattern formed by swollen waved
and occasionally fused ridges (Sakayama et al., 2002),
but the fossa wall of N. inversa has a papillate pattern,
with flanged spiral ridges on the surface under SEM
observation. The algae are clearly distinguished from each
other in oospore wall ornamentation, as in the position of
antheridia on the branchlet nodes (Wood, 1965; Sakayama
et al., 2002). The characteristics of N. inversa collected
from Taiwan
agreed well with those morphological
characteristics, and we suggest that they are different
species.
Many charophyte species have declined in response
to the changes in their habitats (Moore, 1991; Blindow
and Langangen, 1995; Simons and Nat, 2000). Given
the apparent pattern of decline in this family and genus,
further decline could be prevented by conserving the
natural water-regimes of the extant populations. Secondly,
conservation strategies based on protection of endangered
habitat and ecosystems are likely to benefit these species,
as they have L. barbatus in its current habitat in Australia
Acknowledgments. The authors are grateful to Mr.
Sheng-Yu Wu and Mr. Shi-Qiang Liu for their help in
field collections. Sincere thanks to Dr. Ausrys Balevicius,
Institute of Ecology, Vilnius University, Lithuania for
valuable information on the distributions of L. barbatus in
Lithuania. This study was supported by Academic Sinica
Grant APEC II (Asia Paleo-Environment Changes II) and
National Science Council Grant NSC 92-2611-M-018-001.
LITERATURE CITED
Allen, T.F. 1893. Notes on new Characeae. Bull. Torrey Bot.
Club 20: 119-120.
Blindow, I. and A. Langangen. 1995. Lamprothamnium
papulosum (Wallr.) J. Groves, a threatened charophyte in
Scandinavia. Cryptogamie Algologie 16: 47-55.
Caceres , F.J. 1975. Novedades carologicas Argentinas I. Una
nueva especie de Nitella y tres adiciones al genero para la
flora Argentina. Kurtziana 8: 105-125.
Cas an ova, M. T. 1 991. An S E M st udy of de vel opm enta l
Table 2. Pairwise distance between the populations in Taiwan and other countries of L. barbatus, N. japonica, N. inversa in the
rbcL (1169 bp), atpB (1020 bp) genes and combining (2189 bp) sequence. Each number indicates the absolute distances and
sequence divergence in parentheses based on Kimura 2-parameter method (%).
L. barbatus
N. japonica
N. inversa
rbcL gene
0-2 (0-0.086)
0 (0)
1 (0.086)
atpB gene
2 (0.197)
0 (0)
2 (0.197)
Combining sequence
1 (0.046)
0 (0)
3 (0.138)
pg_0009
CHOU et al. ¡X Three new members of Characeae from Taiwan
125
variation in oos pore wall ornamentation of three Nitella
species (Chrophyta) in Australia. Phycologia 30: 237-242.
Casanova, M.T. 1997. Oospore variation in three species of
Chara (Charales, Chlorophyta). Phycologia 36: 274-280.
Casanova, M.T., A. Garcia, and M. Feist. 2003. The ecology and
conservation of Lychnothamnus barbatus (Characeae). Acta
Micropalaeontologica Sin. 20: 118-128.
Cimino, M.T. and C.F. Delwiche. 2002. Molecular and
morphological data identify a cryptic species complex
in endophytic members of the genus Coleochaete Breb.
(Charophyta: Coleochaetaceae). J. Phycol. 38: 1213-1221.
Farris, J.S., M. Kallersjo, A.G. Kluge, and C. Bult. 1994. Testing
significance of congruence. Cladistics 10: 315-319.
Fels enstein, J. 1985. Confidence lim its on phylogenies , an
approach using the bootstrap. Evolution 39: 783-791.
Garcia, M. 2003. Lychnothamnus barbatus (Meyen) Leonhardi
from Au st rali a: s ta tis ti cal anal ys is of its gyrogoni te
an d c om p a ri s o n wi th E u ro pe a n c ol l e ct i o ns . A c ta
Micropalaeontologica Sin. 20: 111-117.
Hasegawa, M., H. Kishino, and T. Yano. 1985. Dating of the
humanape splitting by a molecular clock of mitochondrial
DNA. J. Mol. Evol. 22: 160-174.
Imahori, K. 1951. Studies on the Charophyta in Formosa (I).
Sci. Rep. Kanazawa Univ. 1: 201-221.
Imahori, K. 1953. Studies on the Charophyta in Formosa II. Sci.
Rep. Kanazawa Univ. 2: 115-137.
Ima hori, K. 1954a . Si mi larit y bet we en t he Cha race ae of
Formosa and Philippine islands. Acta Phytotaxonomica et
Geobotanica 15: 123-128.
Imahori, K. 1954b. Ecology, Phytogeography and Taxonomy of
the Japanese Charophyta. Kanazawa University, Kanazawa,
Japan.
Imahori, K. 1957. Similarity between the Characeae of Formosa
and the Philippines. Proc. Eighth Pacific Science Congress
4: 563-568.
John, D.M. and J.A. Moore. 1987. An S EM study of oospore
of some Nitella s pec ies (Charal es , Cha rophyta) wit h
descriptions of wall ornamentation and assessment of its
taxonomic importance. Phycologia 26: 334-355.
John, D.M., J.A. Moore, and D.R. Green. 1990. Preliminary
observations on the structure and ornamentation of the
oosporangial wall in Chara (Charales, Chlorophyta). Br.
Phycol. J. 25: 1-24.
Karol, K.G., R.M. McCourt, M.T. Cimino, and C.F. Delwiche.
2001. The closest living relatives of land plants. Science
294: 2351-2353.
Kimura, M. 1980. A simple method for estimating evolutionary
rates of base substitutions through comparative studies of
nucleotide sequences. J. Mol. Evol. 16: 111-120.
Kutzi ng, F.T. 1843. P hyc ologia Generalis, oder Anatom ie,
Physiologie und Systemkunde der Tange. Leipzig.
Leitch, A.R., D.M. John, and J.A. Moore. 1990. The
oosporangium of the Characeae (Charophyta, Charales).
Prog. Phycol. Res. 7: 213-268.
Leonhardi (P.C.P.G.) H. von. 1863. Ueber die bohmmischen
Characeen. Lotos 13: 55-62, 69-80, 110, 111.
Liu, S.L. and W.L. Wang. 2004. Two new members of freshwater
red algae in Taiwan: Compsopogon tenellus Ling et Xie and
C. chalybeus Kutzing (Compsopogonaceae, Rhodophyta).
Taiwania 49: 32-38.
Lockhart, P.J., T.J. Beanland, C.J. Howe, and A.W.D. Larkum.
1992. Sequence of Prochloron didemni atpBE and the
inference of chloroplast origins. Proc. Natl. Acad. Sci. 89:
2742-2746.
Mandal, D.K., S. Ray, and A. Mukherjee. 1995. Scanning elec-
tron microscopic s tudy of compound oospore wall orna-
mentations in some taxa under Nitella furcata complex
(Charophyta) from India. Phytomorphology 45: 39-45.
Manhart, J. 1994. Phylogenetic analysis of green plant rbcL se-
quences. Mol. Phyl. Evol. 3: 114-127.
McCourt, R.M., K.G. Karol, M. Guerlesquin, and M. Feist.
1996. Phylogeny of extant genera in the family Characeae
(Charales , Charophyceae) based on rbcL sequences and
morphology. Am. J. Bot. 83: 125-131.
McCourt, R.M., K.G. Karol, M.M. Gollerbach, and M. Feist.
1999. Monophyly of genera and species of Characeae based
on rbcL sequences, with special reference to Australia and
European Lychnothamnus barbatus (Characeae: Charophy-
ceae). Aust. J. Bot. 47: 361-369.
Meiers, S.T., V.M. Proctor, and R.L. Chapman. 1999. Phylogeny
and biogeography of Chara (Chlorophyta) inferred from
18S rDNA sequences. Aust. J. Bot. 47: 347-360.
Meyen, F.J.F. 1827. Beobachtungen und Bemerkungen uber die
Gattung Chara. Linnaea 2: 55-81.
Moore, J.A. 1991. Lamprothamnium papulosum; a pioneer in
the conservation of Characeae and their habitats. Bulletin
Societe Botanique de France, Actualities Botaniques 138:
73-74.
Moriwaka, M. and J. Chyi. 1996. Plankton Algae of Reserviors
in Taiwan. E. P. A. Taipei Press, Taiwan, 155 pp.
Nozaki, H., N. Ohta, H. Takano, and M.M. Watanabe. 1999.
Re-examination of phylogenetic relationships within the
colonial Volvocales (Chlorophyta): an analysis of atpB and
rbcL gene sequences. J. Phycol. 35: 104-112.
Rabe nhorst, G.L. 1847. Deutsc hla nds Kryptogam en-F lora
oder Handbuch zur Be stimm ung der kryptogamis chen
Gewachse Deutschlands, der Schweiz, des Lombardisch-
Venetianischen Konigreichs und Istriens. Vol. 2. Leipzig
Simons, J. and E. Nat. 2000. Past and present distribution of
stoneworts (Characeae) in the Netherlands. Hydrobiologia
340: 127-135.
S aka yama , H., H. No zaki, H. Kas aki, and Y. Ha ra. 2002.
Taxonomic re-examination of Nitella ( Ch a ra l e s ,
Charophyceae) from Japan, based on microscopical studies
of oospore wall ornamentation and rbcL gene sequences.
Phycologia 41: 397-408.
S akayama, H., Y. Hara, a nd H. Nozaki. 2004a. Taxonomic
re-examination of six species of Nitella (C har al es ,
pg_0010
126
Botanical Studies, Vol. 48, 2007
Charophyceae) from Asia, and phylogenetic relationships
within the genus based on rbcL and atpB gene sequences.
Phycologia 43: 91-104.
Sakayama, H., Y. Hara, S. Arai, H. Sato, and H. Nozaki. 2004b.
Phylogenetic analyses of Nitella subgenus Tieffallenia
(Charales, Charophyceae) us ing nuclear ribosomal DNA
internal transcribed spacer s equenc es. Phycologia 43:
672-681.
Sakayama, H., K. Miyaji, T. Nagumo, M. Kato, Y. Hara, and H.
Nozaki. 2005. Taxonomic reexamination of 17 species of
Nitella subgenus Tieffallenia (Charales, Chlorophyceae)
based on internal morphology of the oos pore wall and
multiple DNA marker sequences. J. Phycol. 41: 195-211.
Strimmer, K. and A. von Haeseler. 1996. Quartet puzzling: a
quartet maximum-likelihood method for reconstructing tree
topologies. Mol. Biol. Evol. 13: 964-969.
Swofford, D.L. 2002. PAUP*
-
Phylogenetic Analysis Using Par-
simony (*and Other Methods). Version 4.0
*
Sinauer Associ-
ates, Sunderland MA.
Wang, C.L. and P.C. Chen. 2000. Additions to the freshwater
algae flora of Taiwan. J. Natl. Chiayi Ins. Tech. 69:
183-200.
Wang, W.L., C.S. Lin, C.L. Wang, and P.C. Chen. 2002. The
investigations of freshwater algae in eel- and soft-s hell
turtle-cultivated ponds of Changhua, Taiwan. J. Natl. Chiayi
Ins. Tech. 72: 133-176. (In Chinese).
Wolf, P.G. 1997. Evaluation of atpB nucleotides sequences for
phylogenetic studies of ferns and other pteridophytes. Am.
J. Bot. 84: 1429-1440.
Wood, R.D. 1965. Monograph of the Characeae. In R.D. Wood
and K. Imahori (eds.), A revision of the Characeae, vol. 1. J.
Cramer, Weinheim., 904 pp.
Wu, J.T. 1999. Occurrence of four freshwater rhodophytes in
Taiwan. Taiwania 44: 145-153.
Wu, J.T. 2001. Supplements to the freshwater rhodophytes in
Taiwan. Taiwania 46: 359-362.
Yang, Y.P. and T.N. Chiang. 1978. A synopsis of Taiwan aquatic
plants. Quarterly J. Chinese Forestry 11: 115-122.
Yamagis hi , T. 1992. P lankt on Algae in Ta iwan (Formosa ).
Uchida Rokakuho Press, Tokyo, Japan, 252 pp.