Botanical Studies (2007) 48: 239-242.
*
Corresponding author: E-mail: cxfu@zju.edu.cn; Phone:
+86-571-8820-6607; Fax: +86-571-8643-2273.
INTRODUCTION
"Cat ginseng" is one of the most commonly used
traditional Chinese medicines (TCM) for anti-tumor
therapy in East China (Jiangsu New Medicine College,
1984). It first attracted people¡¦s interest as a catnip
(Tucker and Tucker, 1988). Recently, three compounds,
i.e. dihydronepetalactone, iridomyrmecin, and
dihydroactinidiolide, have proven to be responsible for
the interesting response (Zhao et al., 2006a). Actinidia
valvata had been considered the source of "Cat ginseng"
before our recent studies confirmed A. macrosprma as
the genuine source (Zhao, 2006). It was not surprising
that A. macrosperma and A. valvata had been mistaken
for each other given the similarity in their morphological
and anatomical characters (Liang, 1984). A phylogenetic
analysis based on sequences of matK and ITS also
suggested that A. macrosperma and A. valvata were
sister species (Li et al., 2002). Besides A. valvata, two
more species (A. melanandra, A. chinensis) have been
misidentified as A. macrosperma, and their roots have also
been used as "cat ginseng" in China. The confusion may
have compromised the therapeutic value of this TCM and
jeopardized genuine resources for raw material production.
DNA markers, including PCR-RFLP and DNA
sequences, are useful for the identification and standard -
ization of TCM (Yang et al., 2001). The chloroplast trnD-
trnT region digested by endonuclease HinfI and DdeI has
shown a specific pattern in Sinopodophyllum hexandrum
that is distinct from species of Dysosma. We have used the
PCR-RFLP data to differentiate S. hexandrum (Gong et
al., 2006). The objective of this study was to differentiate
A. macrosperma from other Actinidia species using PCR-
RFLP data and DNA sequences of chloroplast trnK region.
MATERIALS AND METHODS
Seventeen samples were used in this study representing
ten species and four sections of Actinidia (Table 1), and
their voucher specimens are deposited in the Herbarium of
Zhejiang University (HZU). DNAs were extracted from
silica-gel dried leaves using a modified CTAB method
(Doyle, 1991). PCR (polymerase chain reaction) was con-
ducted using primers W83040 (5¡¦-GGG TTG CCC GGG
ACT CGA AC-3¡¦) and W83041 (5¡¦-CAA CGG TAG AGT
ACT CGG CTT TTA-3¡¦) for trnK (Demesure et al., 1995).
A 50 £gl PCR amplification run contained 50 ng template
DNA, 5 £gl 10¡Ñbuffer, 2 mM MgCl
2
, 200 £gM dNTPs,
0.4 £gM of each primer and 2.0 U Taq DNA polymerase.
The PCR reaction was performed using a PTC-100 PCR
DNA Thermal Cycler (Bio-Rad, USA), and the cycling
program included an initial 4 min denaturation at 94¢XC,
which was followed by 35 amplification cycles with 1
min denaturation at 94¢XC, 1 min annealing at 65¢XC, and
a 1.5 min extension at 72¢XC. A final extension step of 7
Authentication of Actinidia macrosperma using PCR-
RFLP based on trnK sequences
Yun-Peng ZHAO, Ying-Xiong QIU, Wei GONG, Jian-Hua LI, and Cheng-Xin FU*
Research Program for Resource Botany and Phytochemistry, Lab. of Systematic & Evolutionary Botany and Biodiversity,
College of Life Sciences, Zhejiang University, Hangzhou, 310058, P. R. China
(Received September 1, 2006; Accepted December 14, 2006)
ABSTRACT
. "Cat ginseng", the dried root of Actinidia macrosperma, is a famous traditional Chinese
medicine against cancers in eastern China. The roots of some other species of the genus Actinidia such as A.
valvata and A. melanandra have also been used as fake "cat ginseng", but they have little therapeutic value.
However, identification of the original plants used to make the crude drugs is difficult, especially during the
vegetation period. In this study we developed molecular markers for the determination and authentication of
A. macrosperma. The restriction digestion of the chloroplast trnK region using endonucleases DdeI and DraI
produces two unique patterns in A. macrosperma, and in the matK sequences, there are 11 sites unique to A.
macrosperma. The molecular markers provide an effective and accurate identification and authentication of A.
macrosperma in Actinidia.
Keywords: Actinidia macrosperma; Actinidia valvata; PCR-RFLP; Molecular marker.
MOLECULAR BIOLOgy
pg_0002
240
Botanical Studies, Vol. 48, 2007
min at 72¢XC was used following the final circle. The PCR
products were run in a 1.5% agarose gel, stained with
ethidium bromide, and visualized under UV light.
Sequences of matK (major part of trnK) were
downloaded from GenBank, and subsequently analyzed
using Sequencher Software 4.0.5 for restriction maps.
The PCR products of the trnK region were digested with
the three restriction endonuleases DdeI, DraI, and RsaI
according to the manufacturer¡¦s instructions (Promega
Corporation, USA). The resulting restriction digests were
separated on a 6% denaturing polyacrylamide gel and
were silver-stained (Brant et al., 1991). The size of the
fragments was estimated by comparison with a DL-2000
DNA ladder (TaKaRa Biotechnology [Dalian] Co., Ltd).
The sequences were aligned using CLUSTAL software
1.81 (Chenna et al., 2003).
RESULTS AND DISCUSSION
The trnK region was about 2580 base pairs (bp) long
for all tested species. Three restriction patterns were
obtained using DdeI (A, B, and C in Figure 1-I). The A
pattern was unique to A. macrosperma; the C pattern ap-
peared in A. arguta var. purpurea and A. melanandra; and
the B pattern was shared by the other species (A. valvata,
A. polygama, A. maloides, A. callosa var. discolor, A.
hemsleyana, A. eriantha, A. chinensis). Two restriction
patterns were observed using DraI (D and E in Figure
1-II). The pattern D with two specific fragments of 200 bp
and 170 bp was specific to A. macrosperma. The digestion
pattern of the remaining species (E) was different from
that of A. macrosperma. The restriction pattern of the trnK
region with RsaI in A. macrosperma was different from
that shown in A. valvata, but was identical to that of most
remaining species (Figure 2). At the DNA sequence level,
A. macrosperma differed from other species at 11 sites
while A. valvata and A. polygama were identical in all
sites except for one (1239 bp).
The results of matK (major part of trnK) sequence
alignment (Table 2) indicate site mutation includes
transversion and transition of a single base, and no base
Table 1. Plants used in this study and their accession numbers in Genbank.
No.
Infra-genus
classification
Species
Locality
Specimen No. Accession No.
1 Sect. Leiocarpae A. macrosperma
Hangzhou, Zhejiang
A2004057 AF322621
2
A. macrosperma
Fuyang, Zhejiang
A2003005
3
A. macrosperma
Fuyang, Zhejiang
A2003006
4
A. macrosperma
Fuyang, Zhejiang
A2003022
5
A. macrosperma
Wuhan, Hubei
A2004071
6
A. valvata
Wuning, Jiangxi
A2003020 AF322602
7
A. valvata
Linan, Zhejiang
A2004066
8
A. valvata
Mt. Tianmu, Zhejiang
A2004078
9
A. valvata
Wuhan, Hubei
A2003010
10
A. polygama
Wuhan, Hubei
A2004072 AF322601
11
A. arguta var. purpurea Mt. Baishanzu, zhejiang A2003001
-
12
A. melanandra
Wuning, Jiangxi
A2003022 AF322600
13
A. maloides
Mt. Emei, Sichuan
A2004047
-
14 Sect. Maculatae
A. callosa var. discolor Linan, Zhejiang
A2004065 AF322614
15 Sect. Strigosae
A. hemsleyana
Mt. Baishanzu, Zhejiang A2003002 AF322608
16 Sect. Stellatae
A. eriantha
Mt. Baishanzu, Zhejiang A2003003 AF322616
17
A. chinensis
Wuning, Jiangxi
A2003021 U61324
I
II
Figru e 1. 6% s ilver-stained polyacrylam ide gels s howing
PCR-RFLP profiles of cpDNA trnK with DdeI and DraI in A.
macrosperma and closely related species. I: DdeI digestion; II:
DraI digestion. 1-5, A. macrosperma; 6-9, A. valvata; 10, A. po-
lygama; 11, A. arguta var. purpurea; 12, A. melanandra; 13, A.
maloides; 14, A. callosa var. discolor; 15, A. hemsleyana; 16, A.
eriantha; 17, A. chinensis; M, DL-2000 DNA ladder. A, B, C, D,
E: different digestion patterns.
pg_0003
ZHAO et al. ¡X
Authentication of
Actinidia macrosperma
using PCR-RFLP
241
Brant, J .B., C.A. Gusta vo, and M.G. Peter. 1991. F ast a nd
s ensitive silver s taining of DNA in polyacrylamide gels .
Anal Biochem. 196: 80-83.
Chenna, R., H. Sugawara, T. Koike, R. Lopez, T.J. Gibson, and
D.G. Higgins. 2003. Multiple sequence alignment with the
Clustal series of programs. Nucl. Acids Res. 31: 3497-3500.
Doyle, J.J . 1991. DNA protocels for plants-CTAB total DNA
isolation. In G.M. Hewitt and A. Johnston (eds.), Molecu-
lar Techniques in Taxonomy. Berlin: Springer Verlag, pp.
283-294.
Demesure, B., N. Sodzi, and R.J. Petit. 1995. A set of universal
primers for amplification of non-coding regions of mito-
chondrial and chloroplast DNA in plants. Mol. Ecol. 4:
129-131.
Fu, R.Z., J. Wang, Y.B. Zhang, Z.T. Wang, P.P. But, and N. Li.
1999. Differentiation of medicinal Codonopsis species from
adulterants by polymerase chain reaction-restriction frag-
ment length polymorphism. Planta Med. 65: 648-650.
Gong, W., C.X. Fu, Y.P. Luo, and Y.X. Qiu. 2006. Molecular
insertions or deletions were found in the studied squences.
There are eleven mutative sites in the matK sequence of
A. macrosperma. The mutative sites of A. valvata and A.
polygama are almost identical, only differing at 1239 bp,
at which thymine was transited into cytosine in A. valvata.
PCR-RFLP has been applied successfully to the
discrimination of medicinal plants and their adulterants
(Panax spp., Ngan et al., 1999; Codonopsis spp., Fu et al.,
1999; Dendrobium chrysanthum and D. fimbriatum, Zhang
et al., 2005; Fritillaria pallidiflora, Wang et al., 2005;
Salvia divinorum, Bertea et al., 2006; Sinopodophyllum
hexandrum, Gong et al., 2006). In this study, our samples
represent all four sections of Actinidia (Liang, 1984),
most species of Sect. Leicarpae, to which A. macrosperma
belongs, and different populations of A. macrosperma and
A. valvata. Patterns A and D are present in all samples of
A. macrosperma, suggesting that both DdeI and DraI can
be applied to the differentiation of A. macrosperma from
its related species. In addition, sequences of the matK
gene in A. macrosperma are distinctive at eleven sites.
Therefore, the chloroplast DNA markers developed here
can be used in the effective and accurate identification and
authentication of A. macrosperma and contribute to its
quality control and raw material production.
Acknowledgements. The authors are grateful to Wuhan
Botanical Garden, Chinese Academy of Sciences for
kindly providing three Actinidia samples. This work was
supported by Science & Technology Bureau of Zhejiang
Province (2006C13077) and China Postdoctoral Science
Foundation (20070411194).
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Table 2. Variable sites of cpDNA matK sequence from Actinidia spp.
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bp
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